Schurr, J.B. Gaieski, C. Melendez, M.G. Education. Related resources Images. Publications. Dubash, M. Sade-Feldman, B. Wesley, E. Horwitz, G.M. Salary estimates are based on 166 salaries submitted anonymously to Glassdoor by Computational Biologist employees. Before joining IBM, Taka Koyama worked at Takeda as a computational chemist and a bioinformatician. … Laxmi is leading the Computational Genomics Group in the Computational Biology Center at the IBM T.J. Watson and a visiting professor at the Courant Institute of Mathematical Sciences, New York. Computational Genomics group at IBM T. J. Watson, Yorktown Heights, NY, USA. Kaplan, E.A. M.G. The 4DNucleome lab in Warsaw, Poland. Haber. The clusters connect to the network infrastructure using 10-gigabit ethernet. A. Bose, M. C. Burch, A. Chowdhury, P. Paschou, P. Drineas. Dubash, M. Sade-Feldman, B. Wesley, E. Horwitz, G.M. The NHGRI 2011 strategic plan identifies bioinformatics and computational biology as a cross-cutting area “broadly relevant and fundamental across the entire spectrum of genomics and genomic medicine.” Projects involving a substantial element of computational genomics or data science account for almost a quarter of NHGRI’s FY2018 budget; these areas are key components of many … Computational Genomics GitHub Visit our GitHub to see some our latest projects. Areas of interest include computational genomics, biomolecular modeling, bionanotechnology, molecular biology, functional genomics and system biology, cancer genomics, drug discovery, nanotechnology, microfluidics, signal processing, computational neuroscience, machine learning, healthcare analytics, real world evidence, translational informatics, health behavior, decision … MANAGER, COMPUTATIONAL GENOMICS, IBM T. J. WATSON RESEARCH CENTER. A. Weiss, E. Charbonnier, E. Ellertsdòttir, Geographical Structure of the Y-chromosomal Genetic Landscape of the Levant: A coastal-inland contrast, Estimating the Ancestral Recombinations Graph (ARG) as Compatible Networks of SNP Patterns, Y-chromosome diversity in Lebanon is structured by recent historical events. I am currently leading the science team in the cancer genomics, neurological genomics (Alzheimer's, Parkinson's), Watson for Genomics . Pathogens, 2020. PhD. Network. Food authentication is emerging as an important field, and at IBM Research we are applying a multidisciplinary approach in collaboration with industry and academia to address this global challenge. Topological data analysis revealed complexity behind ER positive breast cancer subtypes in TCGA transcriptome data T. Koyama,A. Publications 18. About. Watson for Genomics enables molecular pathology laboratories to scale their precision oncology programs to meet the existing and growing needs of personalized cancer care. Primary tab navigation. What’s in your food? Platt, H. Artinian, F. Mouzaya, W. Kahlil, F. Kamar, E. Matisoo-Smith, F. Calafell, N. Taleb, P. Zalloua. Liquid Biopsy Uncovers Drug Resistance Mechanisms in GI Cancer Missed by Tissue Biopsy Templeton, B. Llamas, J. Soubrier, V. Moiseyev, V. Khartanovich, A. Cooper, W. Haak, Genographic Consortium. Wittner, H. Guo, T.D. your own Pins on Pinterest By Front Line Genomics, 20 Semptember, 2019. In the quest for immortality, tumor cells try to save themselves by boosting mitochondrial metabolism, Textual data compression in computational biology: Algorithmic techniques, Genetic inactivation of the polycomb repressive complex 2 in T cell acute lymphoblastic leukemia, Large Scale Association Analysis Identifies Three Susceptibility Loci for Coronary Artery Disease, Evaluation of Methods for De Novo Genome Assembly from High-Throughput Sequencing Reads Reveals Dependencies That Affect the Quality of the Results, Randomization techniques for assessing the significance of gene periodicity results, Sequencing of a QTL-rich Region of the Theobroma cacao Genome using Pooled BACs and the Identification of Trait Specific Candidate Genes, The Three Steps of Clustering in the Post-Genomic Era: A Synopsis, IRiS: Construction of ARG networks at genomic scales, Influences of history, geography, and religion on genetic structure: the Maronites in Lebanon, A Minimal Descriptor of an Ancestral Recombinations Graph, Assessing Pooled BAC and Whole Genome Shotgun Strategies for Assembly of Complex Genomes, Speeding up the Consensus Clustering methodology for microarray data analysis, The autophagic tumor stroma model of cancer or "battery-operated tumor growth": A simple solution to the autophagy paradox, The autophagic tumor stroma model of cancer: Role of oxidative stress and ketone production in fueling tumor cell metabolism, Ancestry informative markers for fine-scale individual assignment to worldwide populations, Ketones and lactate "fuel" tumor growth and metastasis: Evidence that epithelial cancer cells use oxidative mitochondrial metabolism, Y-chromosome R-M343 African lineages and sickle cell disease reveal structured assimilation in Lebanon, Understanding the "lethal" drivers of tumor-stroma co-evolution: emerging role(s) for hypoxia, oxidative stress and autophagy/mitophagy in the tumor micro-environment, A New Method to Reconstruct Recombination Events at a Genomic Scale, Loss of Stromal Caveolin-1 Leads to Oxidative Stress, Mimics Hypoxia, and Drives Inflammation in the Tumor Microenvironment, Conferring the "Reverse Warburg Effect": A Transcriptional Informatics Analysis with Validation, Transcriptional Evidence for the "Reverse Warburg Effect" in Human Breast Cancer Tumor Stroma and Metastasis: Similarities with Oxidative Stress, Inflammation, Alzheimer's Disease, and "Neuron-Glia Metabolic Coupling", Parental consanguinity and family history of coronary artery disease strongly predict early stenosis, Dynamic Changes in the Human Methylome During Differentiation, Recombinomics: Population Genomics from a Recombination Perspective, Alu and B1 repeats have been selectively retained in upstream and intronic regions of genes of specific functional classes, A conserved activation element in BMP signaling during Drosophila development, Minimizing recombinations in consensus networks for phylogeographic studies, Anterior-posterior positional information in the absence of a strong Bicoid gradient, Identifying genetic traces of historical expansions: Phoenician footprints in the Mediterranean, Human and mouse introns are linked to the same processes and functions through each genome's most frequent non-conserved motifs. Jun 2004 – Sep 2008 4 years 4 months. Salloum, F. Mouzaya, M. Haber, Y. Al-Sarraj, Y. Chami, Y. Akle, K. Hirbli, R. Nemr, R. Ahdab1. White, M.E. The course combines lectures with hands-on exercises; students are encouraged to pose challenging problems using their own data. The book covers topics from R programming, to machine learning and statistics, to the latest genomic data analysis techniques. We pursue basic and exploratory research at the interface of algorithmics and genomics. To solve practical problems on a real quantum computer, we must translate the real-world problem into something that can be understood by the physical hardware — a process known as compiling.. About. About. TACG largely focuses on the genetic impact of non-communicable diseases in … The purpose of the PIC is connecting IBMers, working at IBM research labs worldwide, and external collaborators across the field of Computational Biology. The book is designed with the idea that practical and conceptual understanding of data analysis methods is as important, if not more important, than the theoretical understanding, such as detailed derivation of equations in statistics or machine learning. M. P. Lisanti, U. E. Martinez-Outschoorn, B. Chiavarina, S. Pavlides, D. Whitaker-Menezes, Glycolytic cancer associated fibroblasts promote breast cancer tumor growth, without a measurable increase in angiogenesis: Evidence for stromal-epithelial metabolic coupling. Stanton, W.T. Cognitive systems, such as Watson for Genomics (WG), integrate massive amounts of new omic data with the current body of knowledge to … Ting, M. Toner, S.L. A. Boattini, B. Martinez-Cruz, S. Sarno, C. Harmant, A. Useli, P. Sanz, D. Yang-Yao, J. Manry, G. Ciani, D. Luiselli, L. Quintana-Murci, D. Comas, D. Pettener, Genographic Consortium. Mar 20, 2017 - This Pin was discovered by Gary Riccio. IBM 100 Icons of Progress. 198. Building AACR, 2020. Wells, C. Tyler-Smith. Thomas J. Watson Research Center, Yorktown Heights, NY USA +1 914 945 1376 We perform theoretical and experimental studies to analyze and predict the 3D structure of the human genome. Research Lead Computational Genomics - IBM Research UK Warrington, United Kingdom 500+ connections. Bull World Health Organization, 2020. Reads . A. Tsirigos, N. Haiminen, E. Bilal, F. Utro, Open source software in life science research: Practical solutions to common challenges in the pharmaceutical industry and beyond, Woodhead Publishing (Series in Biomedicine No. Hyperactivation of oxidative mitochondrial metabolism in epithelial cancer cells in situ: Visualizing the therapeutic effects of metformin in tumor tissue. A.K. Guzman-Saenz, L. Parida. Preface. Reads . Research at the interface of algorithmics and genomics. To make markets. Oct 2008 – Oct 2011 3 years 1 month. Piras, C.M. Pattern Discovery Researching comparative genomics, combinatorial, k-mer, and epigenomic patterns. manager, computational genomics, ibm t. j. watson research center Launched in 2008, the collaboration among Mars, the USDA and IBM set off to sequence the cocoa genome in order to identify and isolate specific gene variations that correlate to desirable hereditary traits. We have internship positions available in the Healthcare and Life Sciences Group at IBM Thomas J. They have written this manual over the course of several years, and in a variety of formats. Scientific Reports, 2020. Computational Genomics - overview. Projects 2. Liked by Dr. Ritesh Krishna. Schurr, Genographic Consortium. Gandhirajan, K. Vijayakumar, M. Narayanan, M. Jayalakshmi, J.S. Martinez-Outschoorn, M. Prisco, A. Ertel, The footprint of recombination gives a new insight in the effective population size and the history of the Old World human populations, Experiences with Mining Temporal Event Sequences from Electronic Medical Records: Initial Successes and Some Challenges, OMiR: Identification of associations between OMIM diseases and microRNAs, Genomic Regions Tools for High-throughput Analytics in Genomics. A.C. Clarke, S. Prost, J.A. Ketones and lactate increase cancer cell "stemness," driving recurrence, metastasis and poor clinical outcome in breast cancer: achieving personalized medicine via Metabolo-Genomics. We developed this book based on the computational genomics courses we are giving every year. Parida was educated at New York University (NYU) where she was awarded a PhD in 1998 for research on algorithms for computational genomics … Structure of the book. Overview; Research - selected tab, Publications; Software; Group members; Genomics. food safety). Research Center, Yorktown Heights, NY and IBM Research, Cambridge, MA. Vilar, A.C. Owings, R. GÛmez, R. Fujita, F.R. This research is conducted often in collaboration with partners in universities, medical research centers, biotechnology companies and the pharmaceutical and health care industry. U. E.Martinez-Outschoorn, D. Whitaker-Menezes, S. Pavlides, B. Chiavarina, G. Bonuccelli, T. Casey, VARUN: Discovering Extensible Motifs under Saturation Constraints. Badro, B. Douaihy, M. Haber, S.C. Youhanna, A. Salloum, M. Ghassibe-Sabbagh, B. Johnsrud, G. Khazen, E. Matisoo-Smith, D.F. Search for people. MS Bioinformatics. Cancer Genomics    Analyzing sequencing data (DNA, RNA, ChIP ...), including the use of  Watson, for genomic medicine studies. Cazier, M. Ghassibe-Sabbagh, S. Youhanna, D.A. He optmized compounds in a PLK1 inhibitor project and TAK-960 entered into a clinical trial. Nieman, N. Hacohen, A.M. Näär, D.T. The national average salary for a Computational Biologist is $100,272 in United States. By Biotecnika, 16 Septmember, 2019. Our research activity uses computational and experimental approaches to reach these goals by finding answers to specific molecular, evolutionary and biomedical questions. Computational genomics (often referred to as Computational Genetics) refers to the use of computational and statistical analysis to decipher biology from genome sequences and related data, including both DNA and RNA sequence as well as other "post-genomic" data (i.e., experimental data obtained with technologies that require the genome sequence, such as genomic DNA microarrays). This section aims to rapidly publish new methods, research findings, opinions, and hypothesis articles on all aspects of the discipline. R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend) - IMB-Computational-Genomics-Lab/ascend D. Whitaker-Menezes, U.E. At IBM, work is more than a job - it's a calling: To build. D.E. Contact. Moreover, in-silico simulation of such models produce mechanistic explanations of cellular behavior that can be used, for instance, to design new targeted therapies. Who We Are. Dr. Laxmi Parida is an ISCB Fellow, IBM Fellow, Master Inventor and leads Computational Genomics at the IBM T J Watson Research Center. 1,453. - Computational Genomics We are a very dynamic research group with particular focus in computational genomics at the MRC/UVRI, Uganda and London School of Hygiene and Tropical Medicine, UK with strong partnership with organisations such H3ABioNet and H3Africa and other research groups. 2020-09-30. 15. TACG is open to collaboration globally. Stott, G. Getz, S. Maheswaran and D.A. Mar 20, 2017 - This Pin was discovered by Gary Riccio. IBM Unlocks Dark Matter DNA Mysteries Using Artificial Intelligence. The goal of computational biology in the early twenty-first century is to link the various genome sequencing projects to a high-throughput effort in complete structural and functional annotation of whole genomes or biological pathways. Martinez-Outschoorn, N. Flomenberg, R.C. We apply data science and computer science to biological research, working on multi-omics analysis, discovery of new antimicrobial, and biochemical … About. Logic, Topology and Genomics Bring together tools from logic and topology in a novel way, as a method towards analyzing large genomic data-sets. About. Computational Genomics - News. One gene sequence might give a tree its ability to tolerate drought, while another variant helps … Soria-Hernanz, R.S. About. She is a visiting professor at the Courant Institute of Mathematical Sciences, New York. To consult. S. Saadè, J.-B. We also provide a cluster running CEPH, which holds up to 450 terabytes of replicated object storage. Reads . The clusters connect to the network infrastructure using 10-gigabit ethernet. IBM your own Pins on Pinterest Laxmi Parida is an IBM Master Inventor and group leader in computational genomics at the Thomas J. Watson Research Center and Courant Institute of Mathematical Sciences in … If so, lets talk. G. Migneco, D. Whitaker-Menezes, B. Chiavarina, R. Castello-Cros, S. Pavlides, R. G. Pestell, A. Fatatis, N. Flomenberg, Ancestral Recombinations Graph: A Reconstructability Perspective using Random-Graphs Framework, Estimating the Ancestral Recombinations Graph (ARG) as compatible networks of SNP Patterns, Graph Model of Coalescence with Recombinations, ALOX5AP gene variants show differential association with coronary artery disease in different populations, Combinatorics in Recombinational Population Genomics. Molecular profiling of a lethal tumor microenvironment, as defined by stromal caveolin-1 status in breast cancers. Computational Biology research at IBM spans life sciences research at the interface of information technology and biology. Computational Genomics Group, Computational Biology Center, IBM Research Contact Information Address Phone Email Webpage 1101 Kitchawan Rd., Route 134, Yorktown Heights, NY 10598, U.S.A. +1 914 945 3012 ... IBM T.J. Watson Research Center, New York, NY (advisor: I. Rigoutsos) 16), 2012. Connect with us: IBM Research Facebook IBM Research Twitter IBM Research YouTube IBM Research Blog. 279. IBM The intern will participate in studies of microbial ecology connected with food safety, using metagenomics, metatranscriptomics, statistical analysis, and machine learning. Research Staff Member, Computational Genomics. Dr. Laxmi Parida is an IBM Fellow, Master Inventor and heads the Computational Genomics at the IBM Thomas J. Watson Research Center, USA. 18. De Montis, M. Atzori, M. Marini, S. Tofanelli, P. Francalacci, L. Pagani, C. Tyler-Smith, Y. Xue, F. Cucca, T.G. The national average salary for a Computational Biologist is $100,272 in United States. Computational Biology is an active area within IBM Research, and researchers working on Computational Biology are members of a designated CB Professional Interest Community (PIC). Population Genomics Understanding the dynamics of recombining populations, human migratory history, and other stories from genetic data. - Computational Genomics Contact. Publications 15. Here is a list of computational genomics tasks that can be completed using R. 2.1.6.1 Data cleanup and processing. Z. Waks, O. Weissbrod, B. Carmeli, R. Norel. Salary estimates are based on 166 salaries submitted anonymously to Glassdoor by Computational Biologist employees. Reads . Variant analysis of SARS-COV-2 genomes T. Koyama, D.E. She is a visiting professor at the Courant Institute of Mathematical Sciences, New York. Salloum, B. Douaihy, R. Othman, N. Shasha, S. Kabbani, H. El Bayeh, E. Chammas, M. Farrall, D. Gauguier. Publications 15. Royyuru, GenomicTools: a computational platform for developing high-throughput analytics in genomics, Non-redundant Representation of Ancestral Recombinations Graphs. We address genomics (and beyond) related questions through mathematical and statistical modeling, combinatorics and algorithmics. Emergence of Drift Variants That May Affect COVID-19 Vaccine Development and Antibody Treatment T. Koyama, D. Weeraratne, J. L. Snowdon, L. Parida. Prior to joining IBM in … Badro, Y. Kamatani, J. Hager, J.S. Who We Are. About. IBM Watson for Genomics uses AI to provide expertly-validated, comprehensive variant information designed to enable rapid, scalable, and customizable reporting . Network. Icon STRUCTURAL GENOMICS. Sustainable Cocoa ; The Mapping of Humanity's Family Tree ; Computational Genomic Git. Lies, Gosh Darn Lies, and Not Enough Good Statistics: Why Epidemic Model Parameter Estimation Fails. RECOMB - LNCS, 2020. Publications. Wong, B.S. Birbe, A.K. IBM Research locations; Hartree Centre; Life science Advancing technologies to forge new discoveries in the science of living systems. A new technology platform shows early signs of promise. Filter by location to see Computational Biologist salaries in your area. IBM's Watson to Help Unlock Life-saving Insights from Cancer Patient DNA . Contact. Witkiewicz, J. Kline, M. Queenan, J.R. Brody. To code. What does Watson for Genomics do for your organization. Cancer Discovery, 2020. We are a very dynamic research group with particular focus in computational genomics at the MRC/UVRI, Uganda and London School of Hygiene and Tropical Medicine, UK with strong partnership with organisations such H3ABioNet and H3Africa and other research groups. ISCB Fellow, IBM Fellow, Master Inventor, Manager, Computational Genomics Group. Simulator of polyploid populations. To collaborate. 198. Rob, Liz Dinsdale, Tom Jeffries, Bruno Gomez-Gil, and several other colleagues and friends have been teaching genomics and metagenomics for a long time. Robs manual for the computational genomics and bioinformatics class. Wittner, H. Guo, T.D. Dr. Laxmi Parida is an ISCB Fellow, IBM Fellow, Master Inventor and leads Computational Genomics at the IBM T J Watson Research Center. TACG largely focuses on the genetic impact of non-communicable diseases in … Watch 5 Star 22 Fork 10 R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend) 22 stars 10 forks Star Watch Code; Issues 7; Pull requests 0; Actions; Projects 0; Security; Insights Dismiss Join GitHub today. The Computational Genomics group, at IBM TJ Watson Research Center, pursue basic and exploratory research at the interface of algorithmics and genomics. Soria-Hernanz , V. John Kavitha , V.S. CluStrat: A Structure Informed Clustering Strategy for Population Stratification. The book covers topics from R programming, to machine learning and statistics, to the latest genomic data analysis techniques. The confluence of genomic technologies and cognitive computing has brought us to the doorstep of widespread usage of personalized medicine. Contribute to ComputationalGenomics/SimBA development by creating an account on GitHub. Computational Genomics with R provides a starting point for beginners in genomic data analysis and also guides more advanced practitioners to sophisticated data analysis techniques in genomics. Report this profile; Activity. Publications 279. About. Computational Genomics Group, IBM T.J. Watson Research Center Cognitive and Cloud, Data-Centric Systems Solutions, IBM T.J. Watson Research Center Healthcare and Life Sciences, IBM Research – Almaden Science and Technology Research Council (STFC), United Kingdom Autosomal genetics and Y-chromosome haplogroup L1b-M317 reveal Mount Lebanon Maronites as a persistently non-emigrating population. Launched in 2008, the collaboration among Mars, the USDA and IBM set off to sequence the cocoa genome in order to identify and isolate specific gene variations that correlate to desirable hereditary traits. Network. To think along with clients and sell. Computational Genomics with R provides a starting point for beginners in genomic data analysis and also guides more advanced practitioners to sophisticated data analysis techniques in genomics. Genomics: How a Cutting-Edge Field is Fighting COVID-19 In early January, researchers identified an irregular, lethal pneumonia spreading through China as the disease we now know as COVID-19. We were interested in population genetics approaches for characterizing the variations in human genomes as well as computational methods for understanding the functional consequences of this variation. Wells, The Genographic Consortium. M. Ghassibe-Sabbagh, M. Deeb, A.K. GenomicTools: a computational platform for developing high-throughput analytics in genomics. Santos, D. Comas, O. Balanovsky, E. Balanovska, P. Zalloua, H. Soodyall, R. Pitchappan, A. GaneshPrasad, M. Hammer, L. Matisoo-Smith, R.S. These computational clusters are supported by 12 data servers and 4 metadata servers running IBM GPFS; together they provide over 1 petabyte of usable, replicated network storage. Post-doctoral Researcher IBM. Keynote @Wageningen UR (Number 1 Ag Univ). We are looking to recruit graduate students, postdoctoral fellows, laboratory manager, and a laboratory supervisor. Plant Genomics Analyzing plant traits and populations. Salloum, Y. Al-Sarraj, Y. Akle, K. Hirbli, J. Romanos, F. Mouzaya, D. Gauguier. P. A. Zalloua, Y. Xue, J. Khalife, N. Makhoul, L. Debiane, Detection of Subtle Variations as Consensus Motifs, PCA and clustering reveal alternate mtDNA phylogeny of N and M clades, Genetic determinants and evolutionary history of Richter’s syndrome, CluStrat: A Structure Informed Clustering Strategy for Population Stratification, Lies, Gosh Darn Lies, and Not Enough Good Statistics: Why Epidemic Model Parameter Estimation Fails, The lipogenic regulator SREBF2 induces Transferrin in circulating melanoma cells and suppresses ferroptosis, Emergence of Drift Variants That May Affect COVID-19 Vaccine Development and Antibody Treatment, Estimation of lesion-specific mutation shedding in cfDNA from rapid autopsy study, Topological data analysis revealed complexity behind ER positive breast cancer subtypes in TCGA transcriptome data, Autosomal genetics and Y-chromosome haplogroup L1b-M317 reveal Mount Lebanon Maronites as a persistently non-emigrating population, Hierarchically labeled database indexing allows scalable characterization of microbiomes, Human Skin, Oral, and Gut Microbiomes Predict Chronological Age, A Topological Data Analysis Approach on Predicting Phenotypes from Gene Expression Data, Simultaneous Phasing of Multiple Polyploids, Food authentication from shotgun sequencing reads with an application on high protein powders, Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers, Dark-matter matters: Discriminating subtle blood cancers using the darkest DNA, Artificial Intelligence Based Approaches to Identify Molecular Determinants of Exceptional Health and Life Span-An Interdisciplinary Workshop at the National Institute on Aging, Transcriptome characterization and differentially expressed genes under flooding and drought stress in the biomass grasses Phalaris arundinacea and Dactylis glomerata, Sequencing and curation strategies for identifying candidate glioblastoma treatments, A Quantitative and Qualitative Characterization of k-mer Based Alignment-Free Phylogeny Construction, Liquid biopsy versus tissue biopsy to assess acquired resistance and tumor heterogeneity in gastrointestinal cancers, Liquid biopsy versus tissue biopsy to assess acquired resistance and tumor heterogeneity in gastrointestinal cancerDefining subtle cancer subtypes using the darkest DNA, Innovations in large scale liquid biopsy analysis and the Broad/IBM Cancer Resistance Project, Identification of novel genes associated with metastasis from TCGA transcriptomic data, Variants Analysis on GENIE Reveals Novel Recurrent Variants that Affect Molecular Diagnosis of Sizable Numbers of Cancer Patients, Signal Enrichment of Metagenome Sequencing Reads using Topological Data Analysis, Haplotype assembly of autotetraploid potato using integer linear programming, In vitro vs in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes, Essential Simplices in Persistent Homology and Subtle Admixture Detection, DNA combinatorial messages and Epigenomics: The case of chromatin organization and nucleosome occupancy in eukaryotic genomes, Ancient mitogenomes of Phoenicians from Sardinia and Lebanon: A story of settlement, integration, and female mobility, Efficient algorithms for polyploid haplotype phasing, Enhancing Next‐Generation Sequencing‐Guided Cancer Care Through Cognitive Computing, Application of Genome Wide Association and Genomic Prediction for Improvement of Cacao Productivity and Resistance to Black and Frosty Pod Diseases, The SeqAn C++ template library for efficient sequence analysis: A resource for programmers, Full-Text Indexes for High-Throughput Sequencing, Linear time algorithms to construct populations fitting multiple constraint distributions at genomic scales, Association of waterpipe smoking with myocardial infarction and determinants of metabolic syndrome among catheterized patients, Host Phenotype Prediction from Differentially Abundant Microbes Using RoDEO, Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma, Type II diabetes mellitus and hyperhomocysteinemia: a complex interaction, Mapping Post-Glacial expansions: The Peopling of Southwest Asia, Driver gene classification reveals a substantial overrepresentation of tumor suppressors among very large chromatin-regulating proteins, Design of the MCAW compute service for food safety bioinformatics, Novel applications of multitask learning and multiple output regression to multiple genetic trait prediction, Scalable Algorithms at Genomic Resolution to fit LD Distributions, A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis, Caffeine Impact on Metabolic Syndrome Components Is Modulated by a CYP1A2 Variant, Watson for Genomics: Moving Personalized Medicine Forward, Shared genetic variants between serum levels of high-density lipoprotein cholesterol and wheezing in a cohort of children from Cyprus, Sampling ARG of multiple populations under complex configurations of subdivision and admixture, The intrinsic combinatorial organization and information theoretic content of a sequence are correlated to the DNA encoded nucleosome organization of eukaryotic genomes, Characterizing redescriptions using persistent homology to isolate genetic pathways contributing to pathogenesis, Variable-Selection Emerges on Top in Empirical Comparison of Whole-Genome Complex-Trait Prediction Methods, SimBA: Simulation Algorithm to Fit Extant-Population Distributions, Host Trait Prediction of Metagenomic Data for Topology-based Visualization, Data-driven encoding for quantitative genetic trait prediction, MINED: An Efficient Mutual Information Based Epistasis Detection Method to Improve Quantitative Genetic Trait Prediction, Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning, Topological Signatures for Population Admixture, Circulating lipid levels and risk of coronary artery disease in a large group of patients undergoing coronary angiography, ValWorkBench: an open source Java library for cluster validation, with applications to microarray data analysis, T2DM GWAS in the Lebanese population confirms the role of TCF7L2 and CDKAL1 in disease susceptibility, Identifying Genetic Relatives without Compromising Privacy, Genetic diversity in Puerto Rico and its implications for the peopling of the Island and the West Indies, Association of hypertension with coronary artery disease onset in the Lebanese population, Geographic population structure analysis of worldwide human populations infers their biogeographical origins, Comparative exomics of Phalaris cultivars under salt stress, Multivariate epidemiologic analysis of type 2 diabetes mellitus risks in the Lebanese population, IPED2: Inheritance path based pedigree reconstruction algorithm for complicated pedigrees, Best-Fit in Linear Time for Non-generative Population Simulation, Mitochondrial genome sequencing in Mesolithic North East Europe Unearths a new sub-clade within the broadly distributed human haplogroup C1, From cheek swabs to consensus sequences: an A to Z protocol for high-throughput DNA sequencing of complete human mitochondrial genomes, Bayesian versus data driven model selection for microarray data, Effect of sampling on the extent and accuracy of the inferred genetic history of recombining genome, JNK1 stress signaling is hyper-activated in high breast density and the tumor stroma: Connecting fibrosis, inflammation, and stemness for cancer prevention, Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies, Uniparental Markers in Italy Reveal a Sex-Biased Genetic Structure and Different Historical Strata, Y-Chromosome and mtDNA Genetics Reveal Significant Contrasts in Affinities of Modern Middle Eastern Populations with European and African Populations, Genetic History of Populations: Limits to Inference, Efficient in silico Chromosomal Representation of Populations via Indexing Ancestral Genomes, Using Random Graphs in Population Genomics, iXora: Exact haplotype inferencing and trait association, The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color, Ultrametric networks: a new tool for phylogenetic analysis, A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis, Sum of parts is greater than the whole: inference of common genetic history of populations, ARG-based genome-wide analysis of cacao cultivars, Population Differentiation of Southern Indian Male Lineages Correlates with Agricultural Expansions Predating the Caste System, Stability-Based Model Selection for High Throughput Genomic Data: An Algorithmic Paradigm, Evidence of pre-Roman tribal genetic structure in Basques from uniparentally inherited markers, Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis, Is cancer a metabolic rebellion against host aging? Studies to analyze and predict the 3D structure of the discipline cells in situ: Visualizing therapeutic. Persistent Homology and statistical learning on genomic data computational genomics ibm techniques J. Romanos, F. Aguet, R. Burr, Freeman. Are you ready to Lead in this new era of technology and solve some the! New methods, Research findings, opinions, and hypothesis articles on all aspects of the human genome Univ. Us to uncover the general rules and patterns that control and make Life possible and needs..., IBM Research locations ; Hartree Centre ; Life science Advancing technologies to forge discoveries! – Sep 2008 4 years 4 months Hartree Centre ; Life science Advancing technologies to forge new in. Analysis revealed complexity behind ER positive breast cancer subtypes in TCGA transcriptome data T. Koyama D.E. The human genome 945 1376 Research Staff Member, Computational Genomics group at... Using AI to Discover Dark Matter DNA – An Interview with Laxmi Parida, Fellow. 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